From 0551f008e3a685c2874791ca42ebb02b5771c10c Mon Sep 17 00:00:00 2001 From: Tom Kasper Date: Fri, 18 Sep 2026 10:05:12 +0200 Subject: [PATCH] added RTX4060Ti 16GB benchmarks file for HAC v6.0.0 --- .../rtx4060ti_16gb_hac6.benchmarks | 22 +++++++++++++++++++ workflow/Snakefile | 4 ++-- 2 files changed, 24 insertions(+), 2 deletions(-) create mode 100644 reference/dorado_batchsize_files/rtx4060ti_16gb_hac6.benchmarks diff --git a/reference/dorado_batchsize_files/rtx4060ti_16gb_hac6.benchmarks b/reference/dorado_batchsize_files/rtx4060ti_16gb_hac6.benchmarks new file mode 100644 index 0000000..37b7bdf --- /dev/null +++ b/reference/dorado_batchsize_files/rtx4060ti_16gb_hac6.benchmarks @@ -0,0 +1,22 @@ +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,64,3.30009e+06,632258560 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,128,6.44271e+06,1230131200 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,192,9.65407e+06,1833341440 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,256,1.16135e+07,2428070400 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,320,1.49102e+07,3033515520 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,384,1.78824e+07,3632850432 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,448,2.08525e+07,4232636928 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,512,2.07041e+07,4834143744 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,576,2.46837e+07,5436684800 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,640,1.41049e+07,6026650624 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,704,8.64016e+06,6620658176 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,768,2.69247e+07,7217542144 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,832,8.08056e+06,7821590528 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,896,1.83695e+07,8423000064 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,960,1.85477e+07,9031074816 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1024,1.84754e+07,9617802752 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1088,8.00239e+06,10213288960 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1152,2.07533e+07,10818479616 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1216,7.5199e+06,11408048128 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1280,2.00612e+07,12005412352 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1344,2.29336e+07,12578279936 +NVIDIA GeForce RTX 4060 Ti,dna_r10.4.1_e8.2_400bps_hac@v6.0.0,1408,1.38845e+07,13177440768 diff --git a/workflow/Snakefile b/workflow/Snakefile index 7363fb6..2756f3a 100644 --- a/workflow/Snakefile +++ b/workflow/Snakefile @@ -24,8 +24,8 @@ rule all: #'../data/reference_genomes/full_reference.mmi', #'../data/raw_pod5/' #'../data/pod5_files_to_pull', - #'../data/basecalled_reads/hac.fastq.gz' - expand('../data/raw_pod5/PBK98658_853a956f_57f83f46_{batch}.pod5',batch=range(1,config["pod5_dataset_size"]+1,config["pod5_stride"])) + '../data/basecalled_reads/hac.fastq.gz' + #expand('../data/raw_pod5/PBK98658_853a956f_57f83f46_{batch}.pod5',batch=range(1,config["pod5_dataset_size"]+1,config["pod5_stride"])) use rule * from preparation use rule * from baseline