intial version

2026-09-17 22:16:42 +01:00
parent e23ed24fa9
commit 08467102c8
19 changed files with 311 additions and 0 deletions
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+tmp_dir: "/tmp"
+
+# dorado
+dorado_model_dir : "../dorado_models"
+hac_model_name: "dna_r10.4.1_e8.2_400bps_hac@v6.0.0"
+hac_benchmarks_file: "" # add path if available
+hac_min_q: 9 # empty string or 0 to disable
+fast_model_name: "dna_r10.4.1_e8.2_400bps_fast@v5.2.0"
+fast_benchmarks_file: "" #add path if available
+fast_min_q: 8 # empty string or 0 to disable
+
+
+# squiqqle dataset
+pod5_dataset: "nomiss_96BC_P2I_SUP_2026"
+pod5_dataset_size : 293
+pod5_stride : 12 # Use 1 in x pod5 files from the ONT NO-MISS dataset to reduce dataset size / compute requirements