fixed compression of basecalled data, added reference alignment step

2026-09-19 08:49:46 +01:00
parent 9747494090
commit 15c56b9ffb
2 changed files with 31 additions and 2 deletions
@@ -24,8 +24,9 @@ rule all:
        #'../data/reference_genomes/full_reference.mmi',
        #'../data/raw_pod5/'
        #'../data/pod5_files_to_pull',
-        '../data/basecalled_reads/hac.fastq.gz'
+        #'../data/basecalled_reads/hac.fastq.gz'
        #expand('../data/raw_pod5/PBK98658_853a956f_57f83f46_{batch}.pod5',batch=range(1,config["pod5_dataset_size"]+1,config["pod5_stride"]))
+        '../data/aligned_reads/{model}_to_genome.sorted.bam'

 use rule * from preparation
 use rule * from baseline