Changed trap download structure

workflow/rules/baseline_pipeline.smk

@@ -52,16 +52,26 @@ rule download_nomiss_pod5:
 
 rule download_trap_tar:
     output:
-        temp(directory('../data/raw_pod5/trap/all'))
+        temp('../data/raw_pod5/trap/all.tar')
-    threads: 32
+    threads: 4
     params:
         tmp='../data/raw_pod5/trap/trap_all.tar'
     shell:
         """
-        curl -L --http1.1 -A "Mozilla/5.0" "https://api.figshare.com/v2/file/download/45408628" -o {params.tmp}
+        curl -L --http1.1 -A "Mozilla/5.0" "https://api.figshare.com/v2/file/download/45408628" -o {output}
-        tar xf --wildcards -C {output} {params.tmp} 
-        rm {params.tmp}
         """
+rule untar_trap_folder:
+    input:
+        '../data/raw_pod5/trap/all.tar'
+    output:
+        directory('../data/raw_pod5/trap/all')
+    threads: 1
+    shell:
+        """
+        mkdir -p {output}
+        tar xf {input} -C {output}
+        """
+
 rule extract_trap_pod5:
     input:
         '../data/raw_pod5/trap/all'