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Added custom models as submodule, added pipleline for trap species handling (up to alignment). Initial progress on custom model rules

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Tom Kasper
2026-10-03 15:16:36 +01:00
parent 3b93ceaf6e
commit f0cd594148
17 changed files with 270 additions and 21 deletions
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reference/species_list.yaml
+5 -2
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@@ -3,8 +3,6 @@ species_list:
- bacillus_subtilis
- listeria_monocytogenes
- staphylococcus_aureus
# Phylum Bacillota / Firmicutes (False-Positive Checkpoint - Near Bacillus)
- paenibacillus_polymyxa
# Phylum Pseudomonadota / Proteobacteria (Represented)
- cronobacter_sakazakii
- citrobacter_freundii
@@ -14,6 +12,11 @@ species_list:
- salmonella_enterica
- shigella_flexneri
- vibrio_cholerae
trap_species:
# Phylum Pseudomonadota / Proteobacteria (False-Positive Checkpoints - Near Enterobacteriaceae & Vibrio)
- escherichia_coli_k-12
unused_trap_species:
# Phylum Pseudomonadota / Proteobacteria (False-Positive Checkpoints - Near Enterobacteriaceae & Vibrio)
- aeromonas_hydrophila
# Phylum Bacillota / Firmicutes (False-Positive Checkpoint - Near Bacillus)
- paenibacillus_polymyxa