Tom Kasper 3b93ceaf6e Fixed compression to happen at concatenation to save cpu time -> per-pod5-files are deleted anyways, so storage is not a concern.

2026-09-19 09:19:23 +01:00

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binaries

intial version

2026-09-17 22:16:42 +01:00

config

fixed hac6 batchsize file path in config

2026-09-18 09:10:00 +01:00

envs

intial version

2026-09-17 22:16:42 +01:00

rules

Fixed compression to happen at concatenation to save cpu time -> per-pod5-files are deleted anyways, so storage is not a concern.

2026-09-19 09:19:23 +01:00

scripts

intial version

2026-09-17 22:16:42 +01:00

.env_example

intial version

2026-09-17 22:16:42 +01:00

Snakefile

fixed compression of basecalled data, added reference alignment step

2026-09-19 08:49:46 +01:00