24 lines
760 B
YAML
24 lines
760 B
YAML
tmp_dir: "/tmp"
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seed : 0
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# dorado
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dorado_model_dir : "../dorado_models"
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hac_model_name: "dna_r10.4.1_e8.2_400bps_hac@v6.0.0"
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hac_benchmarks_file: "../reference/dorado_batchsize_files/rtx4060ti_16gb_hac6.benchmarks" # add path if available
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hac_min_q: 9 # empty string or 0 to disable
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fast_model_name: "dna_r10.4.1_e8.2_400bps_fast@v5.2.0"
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fast_benchmarks_file: "" #add path if available
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fast_min_q: 8 # empty string or 0 to disable
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# squiqqle dataset
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pod5_dataset: "nomiss_96BC_P2I_SUP_2026"
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pod5_dataset_size : 293
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pod5_stride : 12 # Use 1 in x pod5 files from the ONT NO-MISS dataset to reduce dataset size / compute requirements
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trap_read_limit : '-n 500000'
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# custom ML
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torch_env : '../envs/torch_cpu.yaml'
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budget_tolerance : 0.1
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reads_per_genus : 5000 |