 Tom Kasper
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5e95ea9476
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Changed trap download structure
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2026-10-06 19:14:53 +01:00 |
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Tom Kasper
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673005ceba
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added rocm path
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2026-10-04 10:37:29 +01:00 |
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Tom Kasper
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58974c6af1
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Removed trap dataset read limit
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2026-10-04 09:58:00 +01:00 |
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Tom Kasper
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10b0a29d2b
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Corrected trap dataset handling
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2026-10-04 09:55:42 +01:00 |
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Tom Kasper
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f688e173e7
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Ensured trap donwload runs solo
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2026-10-03 15:52:31 +01:00 |
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Tom Kasper
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097ecab270
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updated curl sybtax for trap data
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2026-10-03 15:51:47 +01:00 |
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Tom Kasper
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0fdb5fa07b
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added limit for number of trap reads to process
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2026-10-03 15:35:38 +01:00 |
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Tom Kasper
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88406e584e
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Updated config and resource requirements
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2026-10-03 15:25:09 +01:00 |
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Tom Kasper
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f0cd594148
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Added custom models as submodule, added pipleline for trap species handling (up to alignment). Initial progress on custom model rules
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2026-10-03 15:16:36 +01:00 |
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Tom Kasper
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3b93ceaf6e
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Fixed compression to happen at concatenation to save cpu time -> per-pod5-files are deleted anyways, so storage is not a concern.
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2026-09-19 09:19:23 +01:00 |
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Tom Kasper
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15c56b9ffb
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fixed compression of basecalled data, added reference alignment step
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2026-09-19 08:49:46 +01:00 |
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Tom Kasper
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1511281885
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typo fix for all rule, fixed f-string handling in dorado model folder helper
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2026-09-17 22:26:44 +01:00 |
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Tom Kasper
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08467102c8
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intial version
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2026-09-17 22:16:42 +01:00 |
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