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Tom/eDNA_Stream_E01
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12 Commits 1 Branch 0 Tags
0fdb5fa07b49d6384bb36ce32900a9016add8316
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7 Commits
Author SHA1 Message Date
Tom Kasper 0fdb5fa07b added limit for number of trap reads to process 2026-10-03 15:35:38 +01:00
Tom Kasper 88406e584e Updated config and resource requirements 2026-10-03 15:25:09 +01:00
Tom Kasper f0cd594148 Added custom models as submodule, added pipleline for trap species handling (up to alignment). Initial progress on custom model rules 2026-10-03 15:16:36 +01:00
Tom Kasper 3b93ceaf6e Fixed compression to happen at concatenation to save cpu time -> per-pod5-files are deleted anyways, so storage is not a concern. 2026-09-19 09:19:23 +01:00
Tom Kasper 15c56b9ffb fixed compression of basecalled data, added reference alignment step 2026-09-19 08:49:46 +01:00
Tom Kasper 1511281885 typo fix for all rule, fixed f-string handling in dorado model folder helper 2026-09-17 22:26:44 +01:00
Tom Kasper 08467102c8 intial version 2026-09-17 22:16:42 +01:00
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